PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0096s0123.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family E2F/DP
Protein Properties Length: 380aa    MW: 41937.7 Da    PI: 4.5573
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0096s0123.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.61.8e-2742107171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          r+++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+irwkg
  Kaladp0096s0123.1.p  42 RYDSSLGLLTKKFINLIKHAEDGILDLNKAAETL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 107
                          6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-2939109IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-1742105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.0E-3442107IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.7E-2444107IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440744.45E-33122224No hitNo description
CDDcd146601.24E-46122224No hitNo description
PfamPF164213.5E-33123222IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSAKGGRVYN KSKGSKGNKA AAQTPMLTAG SPSALTPAGN CRYDSSLGLL TKKFINLIKH  60
AEDGILDLNK AAETLEVQKR RIYDITNVLE GIGLIEKKLK NRIRWKGLDV SQPGGVETDV  120
FSLQTDVENL TLEEQKLDGE IREMQERLRY LSEDENNQKW LFVTEDDIKS LPCFQNETLI  180
AIKAPHGTTL EVPDPDEAAD YPQRRYRIVL RSTMGPIDVY LVSQFEEKFE DMNGAEQSVN  240
CPVASTSRSV ENSGTHATNT ESMGNDITGQ AQDARRLPSD HQMNDNGSDD FVSGIMKIVP  300
DVNTDTDYWF LSDAELSVTE LWHSESGIGN HLEDMHHANY EIGDTSIPQP QTPPSGVTDI  360
PPPSVNSTPR LVCSPKTIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A1e-2437108274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008243467.10.0PREDICTED: transcription factor E2FA
SwissprotQ9FNY01e-139E2FA_ARATH; Transcription factor E2FA
TrEMBLM5W8E60.0M5W8E6_PRUPE; Uncharacterized protein
STRINGVIT_08s0007g02510.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-135E2F transcription factor 3